PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794692.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27349.1 Da    PI: 4.7549
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.4e-151050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    ri ++s r+  + kR + ++KKAeE S+LCd+eva+iifs+
  XP_009794692.1 10 RICSESVRNSILKKRAASLFKKAEEFSILCDVEVAIIIFSE 50
                    677888899999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.091150IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-11160IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-18394IPR002100Transcription factor, MADS-box
PfamPF003198.6E-151050IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARKKLRHTR ICSESVRNSI LKKRAASLFK KAEEFSILCD VEVAIIIFSE GEIQPIAYPS  60
IGQAKEILMR YLSFSEAERL KKLVKHETYL LEKVNEQEEK ISKVEKMNEG KEMDILFNQL  120
VEGKNINELD ARQLKGLLKL SAAKMDKLNE RKKQVIQPSE CPYRPSDFKP VSENVANQTI  180
DLQDVSPATS LMEDLINDPW FVENMAANQN EFGTDEFGTE PAPEEGNDNN AGDDGNPKDL  240
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794692.11e-178PREDICTED: MADS-box protein AGL24-like
RefseqXP_016468130.11e-178PREDICTED: MADS-box protein AGL71-like
TrEMBLM1DAJ02e-83M1DAJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859054e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.15e-19AGAMOUS-like 96